BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB035E12SP1|AL430077
(881 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig604 1008 0.0
>3x_Contig604
Length = 2699
Score = 1008 bits (508), Expect = 0.0
Identities = 528/534 (98%), Gaps = 1/534 (0%)
Strand = Plus / Minus
Query: 11 caattcatctgataaaagtcagtgataaaggaataatgtcagcatgacacatttatgtac 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2699 caattcatctgataaaagtcagtgataaaggaataatgtcagcatgacacatttatgtac 2640
Query: 71 gtaatttatacaaaamattatttgtcaaagggatcactcgctaaaataaatatggggaat 130
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2639 gtaatttatacaaaaaattatttgtcaaagggatcactcgctaaaataaatatggggaat 2580
Query: 131 aacgaacaatgagcagaaccaaccagccgtcgttttggagtatgttaaagaggatttaat 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2579 aacgaacaatgagcagaaccaaccagccgtcgttttggagtatgttaaagaggatttaat 2520
Query: 191 gatcgcatacatcccttcttcacggccattaagctcgc-agttaatcatcaacactgaaa 249
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2519 gatcgcatacatcccttcttcacggccattaagctcgctagttaatcatcaacactgaaa 2460
Query: 250 agcagaaactttacggagctccacgatgtcattaacaatgatcctgacttaatctaacta 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2459 agcagaaactttacggagctccacgatgtcattaacaatgatcctgacttaatctaacta 2400
Query: 310 cagtctcaaatttgcctttgctcaaggctatgtcgtagaattggagatcggcattgtcac 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2399 cagtctcaaatttgcctttgctcaaggctatgtcgtagaattggagatcggcattgtcac 2340
Query: 370 actaattccggttttcgttatgaaataccctaaaaatgaaagaccaacgtcgcatgcggg 429
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2339 actaattccggttttcgttatgaaataccctaaaaatgaaagaccaacgtcgcatggggg 2280
Query: 430 gtaacccccaagttgaaaaaacttaccccgggtagcaaagaagatccaactcacgtgact 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2279 gtaacccccaagttgaaaaaacttaccccgggtagcaaagaagatccaactcacgtgact 2220
Query: 490 agtatctatagattgtttcacgtgtcgcgtactgtttccttctggtctcttctt 543
|||||||||||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct: 2219 agtatctatagattgtttcaggtgtggggtactgtttccttctggtctcttctt 2166
Score = 474 bits (239), Expect = e-134
Identities = 240/241 (99%)
Strand = Plus / Minus
Query: 641 aaaagcgtatgavatttagtacacatgttttgtaacacaaaggaaatccataaatacgta 700
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2059 aaaagcgtatgaaatttagtacacatgttttgtaacacaaaggaaatccataaatacgta 2000
Query: 701 cacttgaagagagtctaaaactgttctacaatcagctttgctaatcattagaattaatcg 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1999 cacttgaagagagtctaaaactgttctacaatcagctttgctaatcattagaattaatcg 1940
Query: 761 ttttctttgacaaattgttttttgtacaagcgtttatctagtgaaattatttcgctatct 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1939 ttttctttgacaaattgttttttgtacaagcgtttatctagtgaaattatttcgctatct 1880
Query: 821 cccagatcattattgaatgatcgcgttttccttgtattgatgagtatcaaatcacttttc 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1879 cccagatcattattgaatgatcgcgttttccttgtattgatgagtatcaaatcacttttc 1820
Query: 881 t 881
|
Sbjct: 1819 t 1819
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6817
Number of Sequences: 1807
Number of extensions: 6817
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 881
length of database: 10,358,551
effective HSP length: 16
effective length of query: 865
effective length of database: 10,329,639
effective search space: 8935137735
effective search space used: 8935137735
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.8 bits)